Glyma13g35180 - SoyBase

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Report for Sequence Feature Glyma13g35180

Feature Type:	gene_model
Chromosome:	Gm13
Start:	36666367
stop:	36670329
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma13g35180

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT3G15350	AT	Annotation by Michelle Graham. TAIR10: Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein \| chr3:5167250-5168882 FORWARD LENGTH=424	SoyBase	E_val: 0	ISS
GO:0016051	GO-bp	Annotation by Michelle Graham. GO Biological Process: carbohydrate biosynthetic process	SoyBase	N/A	ISS
GO:0005794	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: Golgi apparatus	SoyBase	N/A	ISS
GO:0016020	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: membrane	SoyBase	N/A	ISS
GO:0016021	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: integral to membrane	SoyBase	N/A	ISS
GO:0008375	GO-mf	Annotation by Michelle Graham. GO Molecular Function: acetylglucosaminyltransferase activity	SoyBase	N/A	ISS
GO:0016757	GO-mf	Annotation by Michelle Graham. GO Molecular Function: transferase activity, transferring glycosyl groups	SoyBase	N/A	ISS
KOG0799	KOG	Branching enzyme	JGI		ISS
PTHR19297	Panther	GLYCOSYLTRANSFERASE 14 FAMILY MEMBER	JGI		ISS
PTHR19297:SF2	Panther	GALACTOSYLTRANSFERASE-RELATED	JGI		ISS
PF02485	PFAM	Core-2/I-Branching enzyme	JGI		ISS
UniRef100_G7IRB3	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Xylosyltransferase n=1 Tax=Medicago truncatula RepID=G7IRB3_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_I1M377	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1M377_SOYBN	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma13g35180

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma13g35180

Paralog	Evidence	Comments
Glyma12g35330	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma13g35180 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.13g276600	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma13g35180

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma13g35180

Limit To All Plant Sequences

>Glyma13g35180.2   sequence type=transcript   gene model=Glyma13g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
GTAGGATTTGAAGCACTGACACAAACAAACGTACACGTTACAAGTTACAAGTCACACATTAAAAAGAAACTCATTGTTCTCTTCTCTTATTCATTATCATTATTATGCGCTTCATTTTAGAGCCTCTCTCTCTCTTATGTGTTTCTTAGACGTGGACGCGTCCTCCATCACAAACTGACACTATTCAGAGACAGAGATTGTTGAGAAGATATATGAAGAGGATGCCAAATATGTGTGTTGTAGTGGCTGTTTGATGGTGAATTGGCAATTTATTTTTGAGTCATTGATGGAATCATAGAATGTGAAGTATTACTATCCGTGATAGTTCTCAGTTATGGGGTTCTTAAACGTAGAGAAGAAATGGTTATATCCTTTCATAGTGTGTTTTGCAATATGCATGCTCTTACTAGTTTCATCCTTCAACATGGGTCTTGTCTCTAAAATTCACTCCATCAATTCACTCTTTTTCTTTCTCCCTTCTCATTTACGCTCAAACCAAACTGCCCCGGTTATTGTGGAGAGGAAGGCTTCTCCTGCTCCAGCGCCGGCTAGGCCTGCGCTTCCTCGTTTTGCCTACTTGATTTCCGGCTCCAAAGGGGATTTGGAAAAGCTATGGAGAACCCTTCATGCACTTTATCATCCCCTAAACCATTATGTTGTTCATATGGACCTTGAATCACCGCTAGAGGAAAGGATGGAGATTGCACATAGAATTGAAAGACAACATGTATTCGCTGAGGTTGGGAACGTTTATGTAATCACAAAGGCTAACATGGTGACTTACCGAGGACCAACGATGGTTTCTAATACTCTTCATGCTTGCGCCATTCTGCTCAAGAGAAGTAAAGACTGGGACTGGTTTATTAATCTTAGTGCTTCAGACTATCCTCTTGTGACACAGGATGATCTACTATATACTTTTTCAGATTTAGATAGAGGCCTTAATTTCATTGAGCACACAAGTCAGTTAGGGTGGAAGTTTGATAAACGAGCAATGCCGTTAATTGTAGACCCTGGGCTTTACATGTCAACCAAATCTGATGTATTTTGGGTTAATCCTAAGAGACCTCTGCCAACAGCATTTAAATTATTCACTGGTTCAGCATGGACAGTTTTATCACACGACTTTGTTGAATATCTTGTATGGGGATGGGACAATCTGCCAAGGACCCTTCTCATGTACTACACTAATTTTCTGTCTTCCCCTGAAGGCTACTTTCAGACTGTTGCATGCAATGCACCAGAATGGGCTAAAACCCTTGTAAATAGTGACTTGCATTATATTTCCTGGGACGTCCCTCCTAAACAGCACCCTCACGTCCTTAACATCAATGACACAGACAAAATGGTTGAAAGTGGTGCTGCCTTTGCAAGAAAGTTTAAGCAAGATGATCCATCCTTGGATTGGATTGATAAAAAGATTCTCCGTAAGAGAAATGGACTATTCCCGCTCGGTGGTTGGTGCACCGGCAAACCCAAATGTTCTGAGATTGGGAACATTTATAAACTCAAACCGGGTCCGGGGTCTCAAAGGCTTCATCGCCTTGTCGCGGGGCTAACTTTGAAGGCTAAATCTGGTGAGGATCAGTGTAAATAGATCCTGTTGAGGACTTTTGTGGTTGGAGATGGAAGAGTTGGATAGATGAAGGTTATTCTTATAACCAGATACATTAGTATTCCAGCACCTACTTGAAGAGAGACAAGTTTTTGAGGTTAGAGTGCAATTGCACCTCATTCATAATATAGCAAATCAATCCCAGATATTTATTAACTTAGCTATACTTATAGTTAGTTGCCTCTATGTGAAGTACCAAAGCTTGCATGAGAGTCATCTTTCTTTTTGTAGGTCCTTTTTACCCATAGGTAACACAATTTTTAAGCAGCATCATGATCCCGGAATTTTATACATTTTTGCTTATGTTTTTTGTTACTTCACGTTTCATGAGTCACGATCTTTTTGATAGACATCAGAGTTTGGATAATTAAATATTTAAATGCTAGGCTCAATCAGCCAAAAACTCTGCTAGACATTTATTTTCATGTTTCAGTGGATTATGCATGTCTGGATTTATATAAATTGGTTAGTTTTCTCTAGTTCAGTAGCAATTATATTATGACTTGTTTCATCAATTTGGAAAACATTTGTGGCAGAAGAAACATGGGTATTAGGTAACAAGCACAATCTTATTCATTCTCTTTGCTTATAATTCTGGTACATCATGGATATCAG

Coding sequences of Glyma13g35180

Limit To All Plant Sequences

>Glyma13g35180.1   sequence type=CDS   gene model=Glyma13g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTCTTAAACGTAGAGAAGAAATGGTTATATCCTTTCATAGTGTGTTTTGCAATATGCATGCTCTTACTAGTTTCATCCTTCAACATGGGTCTTGTCTCTAAAATTCACTCCATCAATTCACTCTTTTTCTTTCTCCCTTCTCATTTACGCTCAAACCAAACTGCCCCGGTTATTGTGGAGAGGAAGGCTTCTCCTGCTCCAGCGCCGGCTAGGCCTGCGCTTCCTCGTTTTGCCTACTTGATTTCCGGCTCCAAAGGGGATTTGGAAAAGCTATGGAGAACCCTTCATGCACTTTATCATCCCCTAAACCATTATGTTGTTCATATGGACCTTGAATCACCGCTAGAGGAAAGGATGGAGATTGCACATAGAATTGAAAGACAACATGTATTCGCTGAGGTTGGGAACGTTTATGTAATCACAAAGGCTAACATGGTGACTTACCGAGGACCAACGATGGTTTCTAATACTCTTCATGCTTGCGCCATTCTGCTCAAGAGAAGTAAAGACTGGGACTGGTTTATTAATCTTAGTGCTTCAGACTATCCTCTTGTGACACAGGATGATCTACTATATACTTTTTCAGATTTAGATAGAGGCCTTAATTTCATTGAGCACACAAGTCAGTTAGGGTGGAAGTTTGATAAACGAGCAATGCCGTTAATTGTAGACCCTGGGCTTTACATGTCAACCAAATCTGATGTATTTTGGGTTAATCCTAAGAGACCTCTGCCAACAGCATTTAAATTATTCACTGGTTCAGCATGGACAGTTTTATCACACGACTTTGTTGAATATCTTGTATGGGGATGGGACAATCTGCCAAGGACCCTTCTCATGTACTACACTAATTTTCTGTCTTCCCCTGAAGGCTACTTTCAGACTGTTGCATGCAATGCACCAGAATGGGCTAAAACCCTTGTAAATAGTGACTTGCATTATATTTCCTGGGACGTCCCTCCTAAACAGCACCCTCACGTCCTTAACATCAATGACACAGACAAAATGGTTGAAAGTGGTGCTGCCTTTGCAAGAAAGTTTAAGCAAGATGATCCATCCTTGGATTGGATTGATAAAAAGATTCTCCGTAAGAGAAATGGACTATTCCCGCTCGGTGGTTGGTGCACCGGCAAACCCAAATGTTCTGAGATTGGGAACATTTATAAACTCAAACCGGGTCCGGGGTCTCAAAGGCTTCATCGCCTTGTCGCGGGGCTAACTTTGAAGGCTAAATCTGGTGAGGATCAGTGTAAATAG

>Glyma13g35180.2   sequence type=CDS   gene model=Glyma13g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGGGTTCTTAAACGTAGAGAAGAAATGGTTATATCCTTTCATAGTGTGTTTTGCAATATGCATGCTCTTACTAGTTTCATCCTTCAACATGGGTCTTGTCTCTAAAATTCACTCCATCAATTCACTCTTTTTCTTTCTCCCTTCTCATTTACGCTCAAACCAAACTGCCCCGGTTATTGTGGAGAGGAAGGCTTCTCCTGCTCCAGCGCCGGCTAGGCCTGCGCTTCCTCGTTTTGCCTACTTGATTTCCGGCTCCAAAGGGGATTTGGAAAAGCTATGGAGAACCCTTCATGCACTTTATCATCCCCTAAACCATTATGTTGTTCATATGGACCTTGAATCACCGCTAGAGGAAAGGATGGAGATTGCACATAGAATTGAAAGACAACATGTATTCGCTGAGGTTGGGAACGTTTATGTAATCACAAAGGCTAACATGGTGACTTACCGAGGACCAACGATGGTTTCTAATACTCTTCATGCTTGCGCCATTCTGCTCAAGAGAAGTAAAGACTGGGACTGGTTTATTAATCTTAGTGCTTCAGACTATCCTCTTGTGACACAGGATGATCTACTATATACTTTTTCAGATTTAGATAGAGGCCTTAATTTCATTGAGCACACAAGTCAGTTAGGGTGGAAGTTTGATAAACGAGCAATGCCGTTAATTGTAGACCCTGGGCTTTACATGTCAACCAAATCTGATGTATTTTGGGTTAATCCTAAGAGACCTCTGCCAACAGCATTTAAATTATTCACTGGTTCAGCATGGACAGTTTTATCACACGACTTTGTTGAATATCTTGTATGGGGATGGGACAATCTGCCAAGGACCCTTCTCATGTACTACACTAATTTTCTGTCTTCCCCTGAAGGCTACTTTCAGACTGTTGCATGCAATGCACCAGAATGGGCTAAAACCCTTGTAAATAGTGACTTGCATTATATTTCCTGGGACGTCCCTCCTAAACAGCACCCTCACGTCCTTAACATCAATGACACAGACAAAATGGTTGAAAGTGGTGCTGCCTTTGCAAGAAAGTTTAAGCAAGATGATCCATCCTTGGATTGGATTGATAAAAAGATTCTCCGTAAGAGAAATGGACTATTCCCGCTCGGTGGTTGGTGCACCGGCAAACCCAAATGTTCTGAGATTGGGAACATTTATAAACTCAAACCGGGTCCGGGGTCTCAAAGGCTTCATCGCCTTGTCGCGGGGCTAACTTTGAAGGCTAAATCTGGTGAGGATCAGTGTAAATAG

Predicted protein sequences of Glyma13g35180

Limit To All Plant Sequences

>Glyma13g35180.1   sequence type=predicted peptide   gene model=Glyma13g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFLNVEKKWLYPFIVCFAICMLLLVSSFNMGLVSKIHSINSLFFFLPSHLRSNQTAPVIVERKASPAPAPARPALPRFAYLISGSKGDLEKLWRTLHALYHPLNHYVVHMDLESPLEERMEIAHRIERQHVFAEVGNVYVITKANMVTYRGPTMVSNTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLLYTFSDLDRGLNFIEHTSQLGWKFDKRAMPLIVDPGLYMSTKSDVFWVNPKRPLPTAFKLFTGSAWTVLSHDFVEYLVWGWDNLPRTLLMYYTNFLSSPEGYFQTVACNAPEWAKTLVNSDLHYISWDVPPKQHPHVLNINDTDKMVESGAAFARKFKQDDPSLDWIDKKILRKRNGLFPLGGWCTGKPKCSEIGNIYKLKPGPGSQRLHRLVAGLTLKAKSGEDQCK*

>Glyma13g35180.2   sequence type=predicted peptide   gene model=Glyma13g35180   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MGFLNVEKKWLYPFIVCFAICMLLLVSSFNMGLVSKIHSINSLFFFLPSHLRSNQTAPVIVERKASPAPAPARPALPRFAYLISGSKGDLEKLWRTLHALYHPLNHYVVHMDLESPLEERMEIAHRIERQHVFAEVGNVYVITKANMVTYRGPTMVSNTLHACAILLKRSKDWDWFINLSASDYPLVTQDDLLYTFSDLDRGLNFIEHTSQLGWKFDKRAMPLIVDPGLYMSTKSDVFWVNPKRPLPTAFKLFTGSAWTVLSHDFVEYLVWGWDNLPRTLLMYYTNFLSSPEGYFQTVACNAPEWAKTLVNSDLHYISWDVPPKQHPHVLNINDTDKMVESGAAFARKFKQDDPSLDWIDKKILRKRNGLFPLGGWCTGKPKCSEIGNIYKLKPGPGSQRLHRLVAGLTLKAKSGEDQCK*

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